E1 - Future Shellshock

Aired: July 29, 2006

The Turtles and Splinter find themselves in a futuristic world after accidentally being pulled through a time window.

E2 - Obsolete

Aired: August 05, 2006

The Turtles use new technology to create new weapons in an effort to escape the future.

E3 - Home Invasion

Aired: August 12, 2006

A computer virus traps the Turtles inside the Dojo and they must fight for their lives.

E4 - Headlock Prime

Aired: September 30, 2006

Raph competes in a professional wrestling tournament, which is interrupted by a banned wrestler looking to prove himself.

E5 - Playtime's Over

Aired: October 07, 2006

Mikey is excited when a video game sequel is released; the Turtles need a guide to navigate the mall.

E6 - Bishop to Knight

Aired: October 14, 2006

The Turtles find out that Agent Bishop is alive in the year 2105.

E7 - Night of Sh'okanabo!

Aired: October 21, 2006

Mikey brings Cody and his three friends to a horror film festival, where they meet Sh'okanabo face to face.

E8 - Clash of the Turtle Titans

Aired: October 28, 2006

Mikey discovers that someone has taken his old superhero persona, Turtle Titan.

E9 - Fly Me to the Moon

Aired: November 06, 2006

Cody and the Turtles search for a rare alloy on the moon; Inuwashi Gunjin goes there to make sure they do not return alive.

E10 - Invasion of the Body Snatcher!

Aired: November 11, 2006

Jammerhead uses the Bodyjacker to take over Darius Dun's body to steal O'Neil Tech's secrets.

E11 - The Freaks Come Out At Night

Aired: November 25, 2006

Sh'Okanabo implants gene seeds in Mikey, beginning his first test of introducing the seeds into the general population.

E12 - Bad Blood

Aired: December 02, 2006

The Turtles' psychotic clones try to prove that they are bigger, badder and better than the Turtles.

E13 - The Journal

Aired: December 09, 2006

The Turtles come across April and Casey's old future-history journal.

E14 - The Gaminator

Aired: December 16, 2006

Viral sets a trap that digitizes and sucks the Turtles into a prototype game system, the Gaminator.

E15 - Graduation Day - Class of 2105.

Aired: March 24, 2007

Splinter announces that the Turtles will graduate to the next ninja rank, except Michelangelo.

E16 - Timing Is Everything

Aired: March 31, 2007

Sh'Okanabo unleashes a time storm on New York, putting the Turtles in the middle of chaos.

E17 - Enter the Jammerhead

Aired: April 07, 2007

Jammerhead escapes from prison and confronts the Turtles during a visit from Starlee's alien family.

E18 - Milk Run

Aired: April 14, 2007

An intergalactic mercenary enlists the Turtles' help in smuggling a ship full of humanitarian aid past Triceraton gangsters.

E19 - The Fall of Darius Dunn

Aired: April 21, 2007

When Cody uncovers a secret weapons-manufacturing program, he and his uncle have a showdown over who will ultimately control the O'Neilltech empire.

E20 - Turtle X-Tinction

Aired: April 27, 2007

Darius Dunn controls Turtle X to exact revenge on his nephew and the Turtles.

E21 - Race for Glory

Aired: September 08, 2007

Triple Threat crashes a cross-country road race and steals all the cars.

E22 - Head of State

Aired: September 15, 2007

The Turtles must rescue the president before he loses his head to a sinister figure from their past.

E23 - DNA Is Thicker Than Water

Aired: October 06, 2007

Dark Leo tries to prove himself by destroying the Turtles from within.

E24 - The Cosmic Completist

Aired: October 13, 2007

The leader of Inawashi Gunjin asks the turtles for help with a malicious alien.

E25 - The Day of Awakening

Aired: October 20, 2007

When the entire population of Moonbase Bishop goes missing and the Turtles stage an assault on the base, they find a bigger Sh'Okanabo with an army of drones.

E26 - Zixxth Sense

Aired: October 27, 2007

Torbin Zixx persuades the turtles to help him recover an experimental matter transmitter.